Transcript

Sequence

>Osa06LNT0496500.1

GAACTCTAATGAAGACAAACTTTATATCAAAATGGTAGCCCTCGACGCGACCTGATAAGTTTTTGAATTAAAACTGTTTAGGGTTCCAAAATATTGTTGTATATTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGACAAAACATGACTTAAAATAAAAAAAATCAACTACAAAGTTTTAGATCGCGTCGAGGGCTACAAATTTGATATAAAGTTTGTCTTCATTAGAGTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.19765

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0496500.1	DTM_#DNAt_MULE_japo_Os0089	Chr6	+	1782895	1783613	240

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0496500.1	6	qAC-6	Physiological trait	Eating quality	R2869	R1962
Osa06LNT0496500.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0496500.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0496500.1	6	ac6	Physiological trait	Eating quality	RM190	RM587
Osa06LNT0496500.1	6	qAC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0496500.1	6	qGC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0496500.1	6	nan	Resistance or Tolerance	Drought tolerance	RM170	RM204
Osa06LNT0496500.1	6	nan	Morphological trait	Shoot/Seedling	OSR19	RM225
Osa06LNT0496500.1	6	Hd3b	Physiological trait	Flowering	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus