Transcript

Sequence

>Osa09LNT0580100.1

AACTCTAATGAAGACAAACTTTGTATCAAAATTGTAGCACTCGACGCAACCTACAACTTTGTAGTTGAAAAGTTTTTGAATTAAAATTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGAAAACAATGACTTAAAATAAAAAAAATTCAACTACAAAGTTGTAAGTTGTAGATCGCGTCGAGGGCTACAAGTTTGATATAAAGTTCGTCTTCATTAGAGTT

Coding Potentia

Explanation	CPC Score
noncoding	-1.16311

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0580100.1	DTM_#DNAt_MULE_japo_Os0089	Chr9	-	9425517	9426266	259

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0580100.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0580100.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0580100.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0580100.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0580100.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0580100.1	9	apd9	Others	Others	CDO590	G103

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus