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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0523000.1

AGTTTCGTGAAAAAAAATTACTTCCTCTGTTTCACAATGTAAATCATTCTAGTATTTTCCACATTCATATTGATGTTAATGAATCTAGATTTCCAACATTCATATTGATGTTAATAAATCTAAATATATATGTCTAGATTCATTAACATCAATATGAATGTGGAAAATGTTAGAATGACTTACATTGTGAAACGGAGGGAGTAGTTGCTAAATTTTTATGATACA

Coding Potentia
Explanation CPC Score
noncoding -1.15307
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa07LNT0523000.1 DTM_#DNAt_MULE_japo_Os0086 Chr7 + 2675379 2675841 224
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0523000.1 osa-miR1436 Cleavage 3.5 6.546 1 21
Osa07LNT0523000.1 osa-miR5161 Cleavage 5.0 5.733 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0523000.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0523000.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0523000.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0523000.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0523000.1 7 qSNC-7 Resistance or Tolerance Salinity tolerance C1057 R2401
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus