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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0582800.1

TACTCCCTCTGTTTTTTAATAGATAACGCCGTTGACTTTTTCTCACATGTTTAACCATTCGTCTAATTCAAAAAATTTATATAAATGTATAAGATATAAATCACACTTAAAGCACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTATGTATATTTTTTGAATAACAACATGAATGGTTAAACATGTGGGAAGAAGTCAACGGCGTCATCTATTAAAAAAATAGAGGGAGTA

Coding Potentia
Explanation CPC Score
noncoding -1.14569
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0582800.1 osa-miR5824 Cleavage 5.0 7.711 1 24
Osa09LNT0582800.1 osa-miR6248 Cleavage 5.0 7.072 1 21
Osa09LNT0582800.1 osa-miR169i-3p Translation 4.5 11.064 1 22
Osa09LNT0582800.1 osa-miR812a Cleavage 4.5 5.083 1 22
Osa09LNT0582800.1 osa-miR812b Cleavage 4.5 5.083 1 22
Osa09LNT0582800.1 osa-miR812c Cleavage 4.5 5.083 1 22
Osa09LNT0582800.1 osa-miR812d Cleavage 4.5 5.083 1 22
Osa09LNT0582800.1 osa-miR812e Cleavage 4.5 5.083 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0582800.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0582800.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0582800.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus