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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0494200.1

GAACTTTAATGAAGACAAACTTTATATCAAACTTGTAGCTCTCAACGCGATCTACAACTTTGTAGTTGATTTTTTTTTATTTTAAGTCATTTTTTGTCCGAAAATGTAATTTTAAAATTAAAATTTCAAAATCTATAAACATGAAACAATATTTTGGGACCCTAAACAGTTTAAATTCAAAAACTTTTCAACTACAAAGTTGTAGGTCGTGTCAAGGGCTACAATTTTGATATAAAGTTTATCTCCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.39532
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa04LNT0494200.1 DTM_#DNAt_MULE_japo_Os0089 Chr4 + 22065512 22066275 255
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0494200.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0494200.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0494200.1 4 orl1 Morphological trait Culm/leaf S10628 C377
Osa04LNT0494200.1 4 nan Morphological trait Culm/leaf RM3337 RM3785
Osa04LNT0494200.1 4 gpp4 Morphological trait Seed RZ569 RZ565
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus