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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0495700.1

ACTCCCTCCGTTTTTTAATAAATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTATTTTATTATGAGTTGTTTTATCACTCATAGTACTTTAAGTGTGATTTATATCTTATACATTTGCATAAAATTTTTAATAAGACGAATGGTTAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGGTAGT

Coding Potentia
Explanation CPC Score
noncoding -1.5209
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0495700.1 osa-miR5799 Translation 2.5 6.97 1 24
Osa04LNT0495700.1 osa-miR5824 Cleavage 5.0 8.77 1 24
Osa04LNT0495700.1 osa-miR812a Cleavage 5.0 7.557 1 22
Osa04LNT0495700.1 osa-miR812b Cleavage 5.0 7.557 1 22
Osa04LNT0495700.1 osa-miR812c Cleavage 5.0 7.557 1 22
Osa04LNT0495700.1 osa-miR812d Cleavage 5.0 7.557 1 22
Osa04LNT0495700.1 osa-miR812e Cleavage 5.0 7.557 1 22
Osa04LNT0495700.1 osa-miR814a Cleavage 5.0 16.826 1 22
Osa04LNT0495700.1 osa-miR814b Cleavage 5.0 16.826 1 22
Osa04LNT0495700.1 osa-miR814c Cleavage 5.0 16.826 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0495700.1 4 brt4b Resistance or Tolerance Drought tolerance RM1153 RM348
Osa04LNT0495700.1 4 nan Morphological trait Root RM3276 RM3335
Osa04LNT0495700.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0495700.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0495700.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0495700.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495700.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0495700.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0495700.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0495700.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495700.1 4 QGwp4 Physiological trait Source activity RG143 RG214
Osa04LNT0495700.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0495700.1 4 nan Morphological trait Root RG214 C1016
Osa04LNT0495700.1 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0495700.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus