>Osa06LNT0496600.1

CCTTCGTTTTTTAATAGATAACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAATTTTATGCAAATGTATATGATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGTGTCATCTATTAAAAAACGGAGG

Explanation	CPC Score
noncoding	-1.52048

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa06LNT0496600.1	osa-miR5799	Translation	2.5	6.626	1	24
Osa06LNT0496600.1	osa-miR5824	Cleavage	5.0	7.708	1	24
Osa06LNT0496600.1	osa-miR169i-3p	Translation	4.5	11.728	1	22
Osa06LNT0496600.1	osa-miR812a	Cleavage	5.0	5.741	1	22
Osa06LNT0496600.1	osa-miR812b	Cleavage	5.0	5.741	1	22
Osa06LNT0496600.1	osa-miR812c	Cleavage	5.0	5.741	1	22
Osa06LNT0496600.1	osa-miR812d	Cleavage	5.0	5.741	1	22
Osa06LNT0496600.1	osa-miR812e	Cleavage	5.0	5.741	1	22
Osa06LNT0496600.1	osa-miR1442	Cleavage	3.5	14.016	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0496600.1	6	Hd3b	Physiological trait	Flowering	nan	nan
Osa06LNT0496600.1	6	qAC-6	Physiological trait	Eating quality	R2869	R1962
Osa06LNT0496600.1	6	alk6-1	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0496600.1	6	hr6	Physiological trait	Eating quality	RM190	RM253
Osa06LNT0496600.1	6	ac6	Physiological trait	Eating quality	RM190	RM587
Osa06LNT0496600.1	6	qAC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0496600.1	6	qGC-6	Physiological trait	Eating quality	RM190	RM510
Osa06LNT0496600.1	6	nan	Resistance or Tolerance	Drought tolerance	RM170	RM204
Osa06LNT0496600.1	6	nan	Morphological trait	Shoot/Seedling	OSR19	RM225

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus