>Osa03LNT0472700.1

CCTCCGTTTTTTAATAGATGACGTTGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTTAAAAATTTTATGCAAATGTATAAGATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACCTATAACAAAATAAATTATAATTACGTAAATTTTTTAAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAATGGCGTCATCTATTAAAAAACGGAGG

Explanation	CPC Score
noncoding	-1.45598

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0472700.1	osa-miR5799	Translation	2.5	12.598	1	24
Osa03LNT0472700.1	osa-miR5824	Cleavage	5.0	10.394	1	24
Osa03LNT0472700.1	osa-miR812a	Cleavage	5.0	10.601	1	22
Osa03LNT0472700.1	osa-miR812b	Cleavage	5.0	10.601	1	22
Osa03LNT0472700.1	osa-miR812c	Cleavage	5.0	10.601	1	22
Osa03LNT0472700.1	osa-miR812d	Cleavage	5.0	10.601	1	22
Osa03LNT0472700.1	osa-miR812e	Cleavage	5.0	10.601	1	22
Osa03LNT0472700.1	osa-miR1442	Cleavage	3.5	11.693	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0472700.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0472700.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443
Osa03LNT0472700.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0472700.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0472700.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0472700.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472700.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus