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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0546200.1

TTTAATCCCTCGAAAAGATATCCCCTTGTTATTTACATGTCATTTAAATGATTATAAAAAAATTTAAAAAAATTGGGAATGTCTATTAACATGTGATATAACACTTCACAAACATGCAAGTTCAAGTTCAACTTCTACAAATCGTAATAAAAAAACAAATTAAACCGCGGCTAGTTAATGTATACTCAGAGTCAAATTTGTTTTTTCGTTGCGAGATGTCGAAGTTGAATTTTTACTTGCATGTTTGTGGAGTGATATATCACATGTTAATACATCTTCTTAATTTTTTTTAATTTTTTTCATAACTATTTGAGTGACATGCAAACAACGAGGGGATATCCTCTTGAGGGATCAAA

Coding Potentia
Explanation CPC Score
noncoding -1.43917
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa08LNT0546200.1 DTM_#DNAt_MULE_japo_Os0084 Chr8 + 1509981 1510348 355
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0546200.1 osa-miR1877 Cleavage 2.5 12.618 1 24
Osa08LNT0546200.1 osa-miR2905 Cleavage 4.0 12.925 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0546200.1 8 nan Resistance or Tolerance Drought tolerance RM407 RM38
Osa08LNT0546200.1 8 qDTH8 Physiological trait Flowering R1943 R2976
Osa08LNT0546200.1 8 qPL8 Morphological trait Panicle/flower R1943 R2976
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus