Transcript

Sequence

>Osa12LNT0567700.1

GAACTCTAATGAACAAACTTTATATCAAAATTGTAGCCCTCGACGCGACCTACAACTTTGTAGTTGTAAAGTTTTTGAACTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTAAAATTTTAATTTTAAAATTATATTTTGGGACAAAAATGACTTAAAATAAAAAAAAAATCAACTACAAAGTTGTAGATCGCGTCGAGGACTACAAGTTTGATATAAAGTTTGTCTTCATTACAGTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.17862

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa12LNT0567700.1	DTM_#DNAt_MULE_japo_Os0089	Chr12	+	25898923	25899661	253

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0567700.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0567700.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0567700.1	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953
Osa12LNT0567700.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0567700.1	12	qLEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567700.1	12	qNEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567700.1	12	qTIL12	Resistance or Tolerance	Submergency tolerance	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus