Transcript

Sequence

>Osa01LNT0459000.1

GAACTCTAATGAAAACAAACTTTATATCAAAATTGTATCCCTCGACACGAGCTACAACTTTGTAGTTGAAAAGTTTTTAAATTAAAACTGTTTAGGGTCCCAAAATATTATTGCATGTTTATAGATTTTTGAAATTTTAATTTTAAAATTACATTTTGGGACAAAAAAGATGACTTAAAATAAAAAAATTCAACTACAAAGTTGTAGATCACGTCGAGGGCTACAAGTTTGATATAAAGTTTGTCTTCATTAAAATTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.15813

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0459000.1	DTM_#DNAt_MULE_japo_Os0089	Chr1	+	20068665	20069408	257

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0459000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0459000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0459000.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178
Osa01LNT0459000.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0459000.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0459000.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0459000.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0459000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus