Transcript

Sequence

>Osa03LNT0469000.1

GAAATCTAATGAAAACAAACTTTATATCAAACTTGTAGCCCTCAACGCGATCTACAACTTTGTAGTTGAATTTTTTTTATTGTAAGTCATTTTTTTGTCCCAAAATGTAATTTTAAAATTATAATTTCAAAATCTATAAACATGCAACAATATTTTGGGACCCTATACAGTTTTAATTCAAAAACTTTTCAACTACAAAGTTGTAGGTCGCGTCGAGGATTACAATTTTGATATAAAGTTTGTCTTCATTAGAGTTT

Coding Potentia

Explanation	CPC Score
noncoding	-1.14674

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0469000.1	DTM_#DNAt_MULE_japo_Os0089	Chr3	+	23156136	23156879	256

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0469000.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0469000.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0469000.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0469000.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0469000.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0469000.1	3	nan	Morphological trait	Shoot/Seedling	RZ284	RZ403
Osa03LNT0469000.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0469000.1	3	nan	Morphological trait	Panicle/flower	RZ403	RZ452
Osa03LNT0469000.1	3	An5(t)	Morphological trait	Panicle/flower	C1677	R19
Osa03LNT0469000.1	3	nan	Resistance or Tolerance	Insect resistance	G332	R19
Osa03LNT0469000.1	3	qGL-3	Morphological trait	Seed	R19	C1677
Osa03LNT0469000.1	3	qLWR-3	Morphological trait	Seed	R19	C1677
Osa03LNT0469000.1	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0469000.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus