Transcript

Sequence

>Osa12LNT0567100.1

ATTTGACGCCGTTAATTTTTTTAAACATGTTTGACCGTTCATCTTATACAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTATTAACAATAAATTAAATGATAGGAAAATAATTAATAATTACTTAATTTTTTTGATTTATTGTTAAATATACTTTTATGCATACATATAGTTTTACATATTTTATAAAAGTTTTTGAATAAGACGAGTGGTCAAACATGTTTAAGAAAGTTAACGGCGTCAAAC

Coding Potentia

Explanation	CPC Score
noncoding	-1.15504

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0567100.1	osa-miR5540	Cleavage	5.0	12.1	1	21
Osa12LNT0567100.1	osa-miR812a	Cleavage	5.0	12.735	1	22
Osa12LNT0567100.1	osa-miR812b	Cleavage	5.0	12.735	1	22
Osa12LNT0567100.1	osa-miR812c	Cleavage	5.0	12.735	1	22
Osa12LNT0567100.1	osa-miR812d	Cleavage	5.0	12.735	1	22
Osa12LNT0567100.1	osa-miR812e	Cleavage	5.0	12.735	1	22
Osa12LNT0567100.1	osa-miR2929	Translation	5.0	11.275	1	21
Osa12LNT0567100.1	osa-miR2929	Translation	5.0	12.4	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0567100.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0567100.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0567100.1	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953
Osa12LNT0567100.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus