Transcript

Sequence

>Osa02LNT0187000.1

CCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTATTTTGTTATGAGTTGTTTTATTACTCATAGTACTTTTAAGTGTGATTTATATCTTATACATTTGCATAAAATTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.24071

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0187000.1	osa-miR5799	Translation	2.5	7.565	1	24
Osa02LNT0187000.1	osa-miR5824	Cleavage	5.0	9.763	1	24
Osa02LNT0187000.1	osa-miR812a	Cleavage	5.0	8.464	1	22
Osa02LNT0187000.1	osa-miR812b	Cleavage	5.0	8.464	1	22
Osa02LNT0187000.1	osa-miR812c	Cleavage	5.0	8.464	1	22
Osa02LNT0187000.1	osa-miR812d	Cleavage	5.0	8.464	1	22
Osa02LNT0187000.1	osa-miR812e	Cleavage	5.0	8.464	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0187000.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0187000.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0187000.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0187000.1	2	ss2	Physiological trait	Source activity	RM240	RM213
Osa02LNT0187000.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0187000.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0187000.1	2	sk1(t)	Morphological trait	Seed	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus