Transcript

Sequence

>Osa04LNT0488000.1

GAACTCTAATGAAGATAAACTTTATATCAAACTTGTAGCCCTCAACGCGATCTACAACTTTGTAGTTGATTTTTTTTTATTTTAAGTCATTTTTGTCCCAAAATGTGATTTTAAAATTAAAATTTCAAAATCTATAAACATGCAACAATATTTTGGGACCCTAAACAGTTTTAATTCAAAAAATTTTCAACTACAAAGTTGTAGGTCGTGTCGAGGGCTACAATTTTGATATAAAGCTTGTCTTCATTAGAGGC

Coding Potentia

Explanation	CPC Score
noncoding	-1.18201

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa04LNT0488000.1	DTM_#DNAt_MULE_japo_Os0089	Chr4	+	11530063	11530805	253

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0488000.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0488000.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0488000.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0488000.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0488000.1	4	qPEN-4	Morphological trait	Panicle/flower	RG190	RG908
Osa04LNT0488000.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0488000.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0488000.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0488000.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0488000.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus