>Osa01LNT0461500.1

GAACTCTAATAAAGACAAACTTTATATCAAAATTGTAGCTCTCGACGCGACCTACAACTTTGTAGTTGAAAAGTTTTTGAATTAAAACTGTTTAGGGTCCCAAGATATTGTTGCATGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTCTGGGACAAAAAAATGACTTAGAATAAAAAAAATTCAACTACAAAGTTGTAGATCGTGTCGAGGGCTACAAGTTTGATATAAAGTTTGTCTTCATTAGAATTC

Explanation	CPC Score
noncoding	-1.17089

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0461500.1	DTM_#DNAt_MULE_japo_Os0089	Chr1	-	34361130	34361874	256

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0461500.1	1	An10	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0461500.1	1	qLEJ-1	Morphological trait	Shoot/Seedling	RM212	RM297
Osa01LNT0461500.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0461500.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0461500.1	1	Pi35(t)	Resistance or Tolerance	Blast resistance	RM1216	RM1003
Osa01LNT0461500.1	1	qLRC-1	Resistance or Tolerance	Drought tolerance	RM237	RM302
Osa01LNT0461500.1	1	dth1.1	Physiological trait	Flowering	RG541	RG109
Osa01LNT0461500.1	1	ng1	Morphological trait	Panicle/flower	RG374	RG394
Osa01LNT0461500.1	1	nan	Physiological trait	Source activity	RG374	RG690
Osa01LNT0461500.1	1	sf1	Physiological trait	Source activity	RG374	RG394
Osa01LNT0461500.1	1	sf1	Morphological trait	Seed	RG374	RG394
Osa01LNT0461500.1	1	ng1	Morphological trait	Seed	RG374	RG394
Osa01LNT0461500.1	1	nan	Resistance or Tolerance	Drought tolerance	RG690	RG810
Osa01LNT0461500.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0461500.1	1	nan	Morphological trait	Root	RM212	R2417

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus