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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0562000.1

GAACTCTAATGAAGACAAAATTTATATCAAAATTGTATCCCTCGACGCGACCTACAACTTTGTAGTTGAAAAGTTTTTGAATTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTTGATTTTAAAATTACATTTTGGGACAAAAAAATGACTTTAAATAAAAAAGTTTCAACTACAAAGTTGTAGATCGCGTTGAGGACTACAAGTTTGATATAAAGTTTATCTTCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.15671
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa12LNT0562000.1 DTM_#DNAt_MULE_japo_Os0089 Chr12 - 12403143 12403887 256
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0562000.1 12 nan Physiological trait Eating quality RM247 RM179
Osa12LNT0562000.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0562000.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0562000.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0562000.1 12 qtl12.1 Resistance or Tolerance Drought tolerance RM7195 RM28166
Osa12LNT0562000.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0562000.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0562000.1 12 nan Resistance or Tolerance Other soil stress tolerance RG9 RG241
Osa12LNT0562000.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus