>Osa04LNT0494600.1

GAATTCTAACGAAGACAAACTTTATATCAAACTTGTAGCCCTCGACGCGATCTACAACTTTGTAGTTGAATTTATTTTTATTTTAAGTCATTTTTTGTCCCAAAATGTAACTTTAAAATTAAAATTTCAAAATCTATAAACATGCAACAATATTTTGGGATCCTAAACAGTTTTAATTCAAAAACTTTTCAACTACAAAGTTGTAGGTCGTGTCGAGGGCTACAATTTTGATATAAAGTTTGTCTTCATTAGAGTTC

Explanation	CPC Score
noncoding	-1.08241

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa04LNT0494600.1	DTM_#DNAt_MULE_japo_Os0089	Chr4	-	24249957	24250700	256

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0494600.1	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807
Osa04LNT0494600.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0494600.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0494600.1	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0494600.1	4	nan	Morphological trait	Culm/leaf	RM3337	RM3785
Osa04LNT0494600.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0494600.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0494600.1	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus