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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0462200.1

GAACTCTAATGAAGACAAACTTTATATCAAAATTGTAGCCCTCGACGCGACCTACAACTTTGTAGTTGAAAATTTTTTGAATTAAAACTGTTTAGGATCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGACAAAAAAATGACTTAAAATAAAAAAATTTCAACTACAAAGATGTAGATCGCGTCGAGGGCTACAATTTTGATATAAAATTCGTTTTCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.16098
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa01LNT0462200.1 DTM_#DNAt_MULE_japo_Os0089 Chr1 + 40818662 40819406 256
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0462200.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RG810
Osa01LNT0462200.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0462200.1 1 nan Resistance or Tolerance Drought tolerance RG810 RZ730
Osa01LNT0462200.1 1 qNOP-1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0462200.1 1 qPHT-1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0462200.1 1 qPL-1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Drought tolerance C86 RZ14
Osa01LNT0462200.1 1 yd1b Morphological trait Seed C547 C2340
Osa01LNT0462200.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0462200.1 1 pl1.1 Morphological trait Panicle/flower RZ730 RZ801
Osa01LNT0462200.1 1 qPHT1-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0462200.1 1 sd-1 Morphological trait Dwarf RZ730 RG810
Osa01LNT0462200.1 1 qRIE 1 Resistance or Tolerance Submergency tolerance C86 G54
Osa01LNT0462200.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0462200.1 1 FSM Morphological trait Shoot/Seedling nan nan
Osa01LNT0462200.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
Osa01LNT0462200.1 1 nan Morphological trait Root RG109 RM104
Osa01LNT0462200.1 1 grl1-1 Morphological trait Seed RM431 RM104
Osa01LNT0462200.1 1 nan Physiological trait Eating quality RM8084 RM6827
Osa01LNT0462200.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 tn1-4 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other soil stress tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Morphological trait Seed RZ730 RZ801
Osa01LNT0462200.1 1 fll1 Morphological trait Culm/leaf RZ730 RZ801
Osa01LNT0462200.1 1 ph1 Morphological trait Dwarf RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0462200.1 1 nan Morphological trait Root RZ730 RZ801
Osa01LNT0462200.1 1 sd1 Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0462200.1 1 nan Resistance or Tolerance Drought tolerance RZ730 RZ801
Osa01LNT0462200.1 1 Fh1-2 Morphological trait Dwarf RZ730 RZ801
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus