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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0566400.1

GAACTCTAATGAAGATAAACTTTATATCAAATTTGTAGCCCTCGACACGATCTACAACTTTGTAGTTTATTTTTTTTTATTTTAAGTCATTTTTGTCCCAAAATGTAATTTTAAAATTAAAATTTCAAAATCTATAAACATGCAACAATATTTTGGGACAACAGTTTTAATTCAAAAAATTTTCAACTACAAAGTTGTAGGTCGCGTCGAGGGTTACAATTTTGATATAAAGTTTGTCTTCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.01677
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa12LNT0566400.1 DTM_#DNAt_MULE_japo_Os0089 Chr12 + 23380427 23381103 250
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0566400.1 osa-miR444b.2 Cleavage 5.0 16.926 1 21
Osa12LNT0566400.1 osa-miR444c.2 Cleavage 5.0 16.926 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0566400.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0566400.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus