Transcript

Sequence

>Osa06LNT0509800.1

TCCCTCGAGGGGATATCCCCTCGTTTTTGCATGTCACTTAAATGGTTATAAAAAAATTTGAAAAAAGATGGAAAGGTGTATTAACATGTGATATAACACTCCACAAACATGCAAGTTCAAATTCAACTTCTATATCTCGTAACGAAAAAACAAATTGAACCGCAGCTAGTTAACATATATTCAGAGTCAAATTTGTTTTTTTCGTTGCGAGATGTAGAAGTTGAATTTTTACTTGTATGTTTGTGGAGTGATATATCACATATTAATACATCTTCTTAATTTTTTTCAAATTTTTTCATAACCATTTGAGTGATATGCTAACAACGAGGGGATATCCCCTCGAGGGA

Coding Potentia

Explanation	CPC Score
noncoding	-1.09505

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0509800.1	DTM_#DNAt_MULE_japo_Os0084	Chr6	+	22492541	22492908	346

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0509800.1	6	RPLD4	Physiological trait	Eating quality	RG424	RG172
Osa06LNT0509800.1	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0509800.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0509800.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0509800.1	6	tgw6.1	Physiological trait	Source activity	RG264	RM3
Osa06LNT0509800.1	6	ph6	Morphological trait	Dwarf	RZ667	RG653
Osa06LNT0509800.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0509800.1	6	gw6	Morphological trait	Panicle/flower	RG424	R2549

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus