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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0574200.1

GATTTTAACTGAAAAAGTTATCAAAAACAAAGTTGAATAACTTATCAAGATCTAAAACTATTATTTTGGCCATTTCTTTATCCGATAAAGTGATAGTAACATTATTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAAGACATATATGAATTTTGATAAAAGTGTTATATAGAAAAATGACCAAACTAAAAGTTATAAATCTTGATAAATTATACAACTTTGTTATCGATAATTTTTTCATTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.124
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0574200.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0574200.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0574200.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa10LNT0574200.1 osa-MIR821a 83.146 267 9 274 5.83e-60 228
Osa10LNT0574200.1 osa-MIR821b 76.534 277 7 281 1.38e-31 134
Osa10LNT0574200.1 osa-MIR821c 82.576 264 3 266 3.4e-57 219
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus