>Osa02LNT0480800.1

GATTTCAAATGGGAAAGCCATAAACAGCTAAGTTGTACAACTTATCAAGATATACAACTTTTATTTTGGTCACTTCTTCATCCGACAAAGTGATAGTACCAATGTTTACAAAATTGACATATCTGTGTTGATATTTATAAACCAGATGAGAGAAAAATGATTTTTGTGAATAATATAACTATCACTTTGTCGGATGAAGAAGTGACCAAAATAAAAGTTGTAGTTCTTGATGAGAGGATCAACTTTTCCATTTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.919152

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0480800.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0480800.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0480800.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0480800.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0480800.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0480800.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0480800.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0480800.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0480800.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0480800.1	2	Sn2a	Morphological trait	Dwarf	C424	G45
Osa02LNT0480800.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0480800.1	2	nan	Others	Others	C424	G45
Osa02LNT0480800.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0480800.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0480800.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0480800.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus