>Osa05LNT0520400.1

CAATAATAAAGTTATATAACTCATCAACATCTATAACTTCTATTTTGGTCATTTTCTTCATCCGATAAATTGATTTATAAGATTGTTCACAAAATGTACATCTCTTATATAAGAGATGTACATTTTGTGAACAATCTTATAAATCAATTTATCGGATGAAGAAATGACCAAAATAGAAGTTATAGATCTTGATGAGTTATACAACTTTGTTATTG

Explanation	CPC Score
noncoding	-1.14069

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0520400.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0520400.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0520400.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0520400.1	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0520400.1	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480
Osa05LNT0520400.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0520400.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0520400.1	5	APAGE1	Physiological trait	Eating quality	nan	nan
Osa05LNT0520400.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0520400.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0520400.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus