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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0575900.1

GATCTAACTGAAAAAGTCATCAACAACAAAGTTGTATAATACATCTAAATCTACAATTTTTATTTTGGTCATTTGTTCATCCGATAAAGTGATTGTAACATTGTTCACAAGTTTTACATATCTCCCACATGGTTTCATAATTTATAAGGGAGATGTGTAAATCTTGTGATCAACATTACTATCACTTTGCCGAATGAACAAATGACCAAAATAAAATTTGTAGATCTCAATCAGTTCTACAACTTTTGTGTTCATGACTTTTTTAGCTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.18104
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0575900.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0575900.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0575900.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0575900.1 osa-MIR821b 78.022 273 7 278 1.05e-42 171
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus