>Osa04LNT0490100.1

AATTTTAGCTGAAAAAGTCATCCAATAACAAAGTTGTATAGCTCATCAAGATCTATAACTTTTATTTTGGTCATTTCTTCATCCCGATAAAGTTATAGTAACATTTTCAAAAAAATTACATATCTCTCTTATATTTTATAAAACCATATAAGATATGTAAATTTTGTGAACAATGTTACTATCACTTTGTCGGATGAAGAAATGACTAAAATAAACCATTTATAGATATTGACGAGTTATACCACTTTGTTGTTGATGACTTTTTCACCTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.583691

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0490100.1	osa-miR5543	Translation	3.5	13.986	1	21
Osa04LNT0490100.1	osa-miR418	Cleavage	4.5	12.283	1	21
Osa04LNT0490100.1	osa-miR5162	Cleavage	5.0	13.087	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0490100.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0490100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0490100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0490100.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0490100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490100.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0490100.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa04LNT0490100.1	osa-MIR821a	84.926	272	1	265	4.45e-71	265

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus