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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0465000.1

GATTTCAACTGAAAAAGTCGTCAATAACAAATTGGTGTAACTCATTAATATCTATAACTTTTATTTTGGTCATTTATTCATCCGACAAAGTGATTTGTAAGATTATTCACAAAATGTACATATCTATTATATAGTTTTATAACTATAAGAGAGAGATGTAAATTTTGTGAAAATGTTAGTATCACTTTGTCAAATGAAGAAATGACCAAAATAGAAATTATAGATATCGATGAGTTATACAACTTTGTTGTTGTTGACTTTTTCAGCTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.07446
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0465000.1 osa-miR5157a-3p Cleavage 4.5 8.802 1 24
Osa03LNT0465000.1 osa-miR5157b-3p Cleavage 4.5 8.802 1 24
Osa03LNT0465000.1 osa-miR5506 Translation 4.0 17.866 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0465000.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0465000.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0465000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance RM7249 RM3803
Osa03LNT0465000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0465000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0465000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance nan nan
Osa03LNT0465000.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0465000.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0465000.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0465000.1 3 nan Physiological trait Eating quality RZ574 RZ284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus