Transcript

Sequence

>Osa01LNT0460500.1

GATTTCAACTGAAAAAATCATCAATAACAAAGTTGTATAAATCATCAAGATCTATAACTTTTATATTGGTCATTTTTTCATCCGACAAAGTGATTTGTTCACAAAATGTACATATCTCTTATATAGTTTATAAAACTATAAGAGAGATATATATTTTGTAAACAATCTTACAAATATCTTTATCGGATGAAGAAATGACTAAAATAGAAGTTATATATCTTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding	-1.09668

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0460500.1	osa-miR821a	Cleavage	1.0	15.958	1	24
Osa01LNT0460500.1	osa-miR821a	Translation	4.5	19.381	1	24
Osa01LNT0460500.1	osa-miR821b	Cleavage	1.0	15.958	1	24
Osa01LNT0460500.1	osa-miR821b	Translation	4.5	19.381	1	24
Osa01LNT0460500.1	osa-miR821c	Cleavage	1.0	15.958	1	24
Osa01LNT0460500.1	osa-miR821c	Translation	4.5	19.381	1	24
Osa01LNT0460500.1	osa-miR5506	Translation	4.0	23.685	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0460500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0460500.1	1	QPh1b	Resistance or Tolerance	Submergency tolerance	RZ527	RZ154
Osa01LNT0460500.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0460500.1	1	nan	Morphological trait	Seed	CDO118	CDO455
Osa01LNT0460500.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0460500.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0460500.1	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0460500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa01LNT0460500.1	osa-MIR821b	81.227	277	7	281	1.72e-55	213

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus