Transcript

Sequence

>Osa02LNT0479700.1

AATTTCAGCTGAAAAAGTGATCAACATAAAAGATGTAGAACTCATGCATTAAGACAAACAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATAATAACATTGTTCATAAAATTTACATATCTCTCTTATAGTATATAAAATCATATGAGAGATATGTAGATTTTGTGAACAATATTATTATCACTTTGTCGGATGAAGAAAATGATCAAAATAAAAGTTATAGATCTTGATGAGTTATACAATTTTGTTGTCGGTGACTTTTTCATTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.328563

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0479700.1	osa-miR6249a	Translation	5.0	14.614	1	21
Osa02LNT0479700.1	osa-miR6249b	Translation	5.0	14.614	1	21
Osa02LNT0479700.1	osa-miR5162	Cleavage	5.0	17.843	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0479700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0479700.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0479700.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0479700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0479700.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0479700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0479700.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus