>Osa04LNT0491800.1

GATTTCAACTGAAAAAGTCATTAACAACAAAGTTGTATAACTCATTAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATAGTAACATTGTTCACAAAATGTATACATCTCTCTTATAATTTATGAAACCATATTTGGAGATATGTAAAATTTATTAACAATGTTAAAATCACTATGCCGGATGAATAAATGACCAAAATAAAAATTGTAGATCTAGATGGATTATACAACTTTGTTGTTGATGAGTTTTTCAGTTGAAGTC

Explanation	CPC Score
noncoding	-1.20561

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0491800.1	osa-miR5157a-3p	Cleavage	4.5	9.554	1	24
Osa04LNT0491800.1	osa-miR5157b-3p	Cleavage	4.5	9.554	1	24
Osa04LNT0491800.1	osa-miR5162	Cleavage	5.0	8.052	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0491800.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0491800.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0491800.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0491800.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0491800.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0491800.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0491800.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0491800.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa04LNT0491800.1	osa-MIR821a	81.522	276	1	271	9.76e-58	220

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus