>Osa03LNT0472000.1

GATTTCAACTGAAAAATTCATCAACAATAAAGTTGTATAACTCATCAATATATATAAATTTTATTTTGGCCATTTCTTCATCCGATAAAGTGATAGTATCATTGTTCACAAAATTTACATATATCTCCTATAGTTTATAAACTATATAAGAGATATATATATTTTGTGAAAAATCTTATAAATCACTTTATCGGATGAAGAAATGACCCAAACAAAAGTTATAGATATTGATGAGTTATACCACTTTGTAATTGATGACTTTTTCAGTTAAAATC

Explanation	CPC Score
noncoding	-1.13551

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0472000.1	osa-miR2931	Cleavage	5.0	6.939	1	20
Osa03LNT0472000.1	osa-miR5157a-5p	Cleavage	4.5	8.895	1	24
Osa03LNT0472000.1	osa-miR5157b-5p	Cleavage	4.5	8.895	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0472000.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0472000.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0472000.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0472000.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0472000.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472000.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472000.1	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus