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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0574700.1

GAATTCAACTGAAAAAGTCATCAATAACAAAGTGGTATAACTTATCAAAATCTATAACTTTTATTTGGGTCATTTCTTCATCCGATAAAATGATTTGTAACATTGTTCACAAAATGTACATATCTCTTATATAGTTTTATAAACTATAAGAGAGATGTAAATTTTATGAAAATATTACTATCGCTTTGTTGGATGAAGAAATGATCAAAATAGAAGTCATAAATCTTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.954689
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0574700.1 osa-miR396a-3p Cleavage 4.5 8.818 1 20
Osa10LNT0574700.1 osa-miR396b-3p Cleavage 4.5 8.818 1 20
Osa10LNT0574700.1 osa-miR821a Cleavage 1.0 14.082 1 24
Osa10LNT0574700.1 osa-miR821b Cleavage 1.0 14.082 1 24
Osa10LNT0574700.1 osa-miR821c Cleavage 1.0 14.082 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0574700.1 10 qRf-10-2 Physiological trait Sterility RM258 RZ811
Osa10LNT0574700.1 10 Rf Physiological trait Sterility nan nan
Osa10LNT0574700.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0574700.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0574700.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa10LNT0574700.1 osa-MIR821b 82.31 277 7 281 3.67e-62 235
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus