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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0581600.1

GATTTCAACTGAAAAAGTCATCAATAACAAAGTTGTATAAATCATCAAGATCTATAACTTTTATTTTGGTCATTTTTTCATCCGACAAAGTTATTTGTAATATTGTTCATAAAATGTACATATCTCTTATATAGTTATAAAACTATAAGAGAGATTTACATTTTGTGATCAATCTTACAAAAATCTTTGTCGGATGAAGAAATGACCAAAAAAGAAGTTATATATCTTGATGTGTTATACAACTTTGTTGTTGATGACTTTTTCAGCTGAAATT

Coding Potentia
Explanation CPC Score
noncoding -1.06729
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0581600.1 osa-miR821a Cleavage 1.0 13.22 1 24
Osa09LNT0581600.1 osa-miR821a Translation 4.5 16.452 1 24
Osa09LNT0581600.1 osa-miR821b Cleavage 1.0 13.22 1 24
Osa09LNT0581600.1 osa-miR821b Translation 4.5 16.452 1 24
Osa09LNT0581600.1 osa-miR821c Cleavage 1.0 13.22 1 24
Osa09LNT0581600.1 osa-miR821c Translation 4.5 16.452 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0581600.1 9 qLG-9 Physiological trait Germination/dormancy G103 R1751
Osa09LNT0581600.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0581600.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0581600.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus