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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0464400.1

GATTTCAACTGAAAAAGTCGTCAATAACAAATTGGTGTAACTCATTAATATCTATAACTTTTATTTTGGTCATTTATTCATCCGACAAAGTGATTTGTAAGATTATTCACAGAATGTACATATCTATTATATAGTTTTATAAACTATAAGAGAGAGATGTAAATTTTGTGAAAATGTTAGTATCACTTTGTCAAATGAAGAAATGACCAAAATAGAAATTATAGATCTTGATGAGTTATACAACTTTGTTGTTGTTGACTTTTTCAGCTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.06702
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0464400.1 osa-miR5157a-3p Cleavage 4.5 8.496 1 24
Osa03LNT0464400.1 osa-miR5157b-3p Cleavage 4.5 8.496 1 24
Osa03LNT0464400.1 osa-miR5506 Translation 4.0 18.094 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0464400.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0464400.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0464400.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0464400.1 3 gl3a Morphological trait Panicle/flower C63 RM232
Osa03LNT0464400.1 3 qGW3 Morphological trait Seed C706 C12534S
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus