\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0577600.1

AATTTTAGCTGAAAAAGTCATGAACATGAAAGTTGTAGAGCTCATCAAGACATACAACTTTTATTTTGGTCATTTCTTCATCCGATAAATTGATAATAATATTGTTCACAAAGTTTACATATCTCTCTTATAGTTTATAGAACCAAATGAGATAGATGCAAATTTTGTGAATAATGTTACTATCACTTTGTCGGATGAAGAAATGACCAAAATAAAAAGTTATAGATCTTGATGAATTATATAACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.242479
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0577600.1 osa-miR5162 Cleavage 5.0 17.41 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0577600.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0577600.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0577600.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0577600.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0577600.1 osa-MIR821b 83.895 267 16 281 1.01e-67 254
Osa09LNT0577600.1 osa-MIR821c 84.411 263 1 261 7.21e-69 257
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus