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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0555700.1

GATTTCAACTGAAAAAGTAATGAACACAAAAGTTGTAGAACTGATCAAGATCTACAAATTTTATTTTGGTCATTTGTTCATTTGATAAAGTGATAGTAACGTTGTGTACAAAATTTACACATCTCTCTTATAATTTATGAAACCATACTAGAGATATGTAAAATTTGTGAACAATGTTACTATCACTTTGTCGGATGAATAAATGACCAAAATAAAAATTGTAGATCTAGATGGATTATACATCTTTGTTGTTGATGACTTTTTCAGTTGAAGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.179347
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0555700.1 osa-miR1854-5p Cleavage 4.0 16.863 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0555700.1 8 qMRLw8 Resistance or Tolerance Other soil stress tolerance RM223 R727
Osa08LNT0555700.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0555700.1 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0555700.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0555700.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0555700.1 8 QalRr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
Osa08LNT0555700.1 8 QalSr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa08LNT0555700.1 osa-MIR821a 82.288 271 5 274 1.25e-61 233
Osa08LNT0555700.1 osa-MIR821b 80.443 271 7 277 7.99e-54 207
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus