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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0494000.1

GCTTTCGACTGAAAATGTCATCAAAAAATCAAAAATAAAGTTGTATAACTCATCAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATACTAACATTGTTCACAAAATCACATATCCCTCATCTGGTTTTATAAACTATAACACAGATTTGTGAATCTTGTGAACAATGTTATTAACACTTTATCGGATGAAGAAATGATAAAAATAAAAGTTATAGATCTTGGTGAGTTATACGACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.389905
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0494000.1 osa-miR5162 Cleavage 5.0 10.746 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0494000.1 4 orl1 Morphological trait Culm/leaf S10628 C377
Osa04LNT0494000.1 4 qFRP-4 Physiological trait Source activity RG788 RZ565
Osa04LNT0494000.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0494000.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus