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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0471500.1

GATTTCAACTGAAAAAGTCATCAATAACAAAGTGGCATAACTCATCAAGATCTATAACTTTTATTTGGTTTATTTCTTCCTTCAACAATGTGATTTGTAACATTATTCACAAAATGTACATATCTCTTATATAGTTTATAAGCTATAAGGGAGATATGTAAATTTTGTGAACAATGTTACTATCACTTTATCGGATGAAGAAATGACAAAAATAAAAGTTATAGATTTTGATGATTTATACAACTTTGTTGTTGATGACTTTTTCATTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.055437
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0471500.1 osa-miR821a Cleavage 1.0 17.061 1 24
Osa03LNT0471500.1 osa-miR821b Cleavage 1.0 17.061 1 24
Osa03LNT0471500.1 osa-miR821c Cleavage 1.0 17.061 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0471500.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0471500.1 3 nan Resistance or Tolerance Drought tolerance C136 R1618
Osa03LNT0471500.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus