>Osa05LNT0515800.1

GATTTCAACTGAACAAGTCATCAACAATAAAGTGGTATAACTCATCAATATCTATAACTTTTATTTGGGTCATTTCTTCATCCGACAAAGTGATTTGTAACATTGTTCACAAAATGTATATATCTTTTATATACTTTATTTATAAACTATAAGAGGGATATATAAATTTTGTTAACAATATTACTATTACTTTATCGGATGAAGAAATGACCAAAATAAAAGTTATAGATATTGATGAGTTATACAATTTTGATGTTGATGACTTTTTCAGTTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.137342

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0515800.1	osa-miR2931	Cleavage	4.0	8.754	1	20
Osa05LNT0515800.1	osa-miR5157a-5p	Cleavage	4.5	12.157	1	24
Osa05LNT0515800.1	osa-miR5157b-5p	Cleavage	4.5	12.157	1	24
Osa05LNT0515800.1	osa-miR5506	Translation	4.0	20.54	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0515800.1	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0515800.1	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan
Osa05LNT0515800.1	5	qTHJ-5	Morphological trait	Seed	RM289	RM249
Osa05LNT0515800.1	5	gnp5.1	Morphological trait	Panicle/flower	RM194	RM249
Osa05LNT0515800.1	5	nt5.1	Morphological trait	Culm/leaf	RM169	RM249
Osa05LNT0515800.1	5	snp5.1	Morphological trait	Panicle/flower	RM194	RM249

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus