>Osa03LNT0466000.1

GATTTCAACTGAAAAAGTCATCAACATCAAAGTTGTATAACTCATCAGTATCTATAACTTTTATTTTGGTTATTTCTTCATCCGACAAAGTAATAGTAACATTGTTCACAAAATTTACATATCTCTCCTATAGTTTATAAACTATATAAGGGATATGTACATTTTGTGAATAATGTTATAAATCACTTTGTCGGATGAAAGAATGACCCAAATAAAAGTTATAGGTCTTGATGAGTTATAGAACTTTGTTATTGATAACATTTTCAGTTGAAATC

Explanation	CPC Score
noncoding	-1.37494

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0466000.1	DTM_#DNAt_MULE_japo_Os1428	Chr3	+	15157918	15162952	274

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0466000.1	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0466000.1	3	nan	Morphological trait	Root	RM338	RZ284
Osa03LNT0466000.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0466000.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0466000.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0466000.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0466000.1	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0466000.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus