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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0576900.1

GAATTCAGATGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAAGATCTATAACTTATATTACATTCATTTCCTCATCCGACAAAGTGATGGAAACATTTTCACAAAATTTACATATCTCTCTCCATAGTTTATAAAACTATATAAGAGATATACATTTTGTGAACAATGTTACAGATAACTTTGTTGGATGAAGAAATGACCAAAATAAAAGTTATAGATCCTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.865808
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0576900.1 osa-miR821a Cleavage 1.0 15.31 1 24
Osa09LNT0576900.1 osa-miR821b Cleavage 1.0 15.31 1 24
Osa09LNT0576900.1 osa-miR821c Cleavage 1.0 15.31 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0576900.1 9 nan Morphological trait Root C711 G103
Osa09LNT0576900.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0576900.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0576900.1 osa-MIR821b 83.032 277 7 281 1.69e-65 246
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus