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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0566000.1

GATTTCAACTAAAAAAGTCTTCAACAACAAAGTTGTATAACTCATCAATATCTAAAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGCGATTTGTAACATTGTCCACAAAATGTATATATCTCCTATATAGTTTATAAACTATAAGAGAGATATGTAAATTTTATGAACAATATTACTATCACTTTACCGGATGAAGAAATGACCAAAACAAAAGTTATAAATATTGATGAGTTATACAACTTTGTTGTTGATGATATTTTCGGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0486451
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0566000.1 osa-miR5528 Cleavage 4.5 7.685 1 21
Osa12LNT0566000.1 osa-miR5506 Translation 3.5 11.228 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0566000.1 12 Bph18(t) Resistance or Tolerance Insect resistance RM463 S15552
Osa12LNT0566000.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0566000.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa12LNT0566000.1 osa-MIR821a 84.477 277 1 274 3.44e-72 268
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus