\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0532400.1

GATTTCAAATGGAAAAGTCATCAACAACAACAAAGTTGTATAACTTATCAAGATCTATAACATTTATTTTGGTCATTTCTTCATCCAACAAAGTGATAGTAACATTGTTTATAAAATTCACATATCTCTCATCTGGTTTATAAACTATAACACATATATGTAAATTTTGGGAACAATATTACTAACACTTTGTCGGATGAAGAAACGATAAAAATAAAAGTTATAGGTCATGATGAGTTATACAACTTTGTTGTTGATGACTTATTTTAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.98358
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0532400.1 osa-miR821a Cleavage 1.0 14.903 1 24
Osa11LNT0532400.1 osa-miR821b Cleavage 1.0 14.903 1 24
Osa11LNT0532400.1 osa-miR821c Cleavage 1.0 14.903 1 24
Osa11LNT0532400.1 osa-miR5159 Cleavage 4.0 14.968 1 24
Osa11LNT0532400.1 osa-miR5162 Cleavage 5.0 8.289 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0532400.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0532400.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0532400.1 11 fer11 Resistance or Tolerance Cold tolerance RM3701 RM552
Osa11LNT0532400.1 11 dc11 Resistance or Tolerance Cold tolerance RM552 RM3137
Osa11LNT0532400.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa11LNT0532400.1 osa-MIR821a 87.814 279 1 274 2.6e-88 322
Osa11LNT0532400.1 osa-MIR821c 86.716 271 1 266 1.53e-80 296
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus