>Osa09LNT0579400.1

GATTTCAACTGAAAAATTCATCAACAATAAAGTTGTATAACTCATTAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCAATAAAGTAATAGTAACATTGTTCACAAAATTTACATATATCTCTTATAGATTATAAAACAGTATAAGAGATATGTAAAATTTGTAAACAATGTTACTATCACTTTATCAGATGAAGAAATGACCAAAATAAAAATTGTAGATACAGATGGATTATACAACTTTGTTGTTGATGACTTTTTCAGTTGAAGTC

Explanation	CPC Score
noncoding (weak)	-0.176088

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0579400.1	DTM_#DNAt_MULE_japo_Os1428	Chr9	+	8211977	8217333	274

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0579400.1	osa-miR821a	Cleavage	1.0	12.697	1	24
Osa09LNT0579400.1	osa-miR821a	Translation	4.5	8.083	1	24
Osa09LNT0579400.1	osa-miR821b	Cleavage	1.0	12.697	1	24
Osa09LNT0579400.1	osa-miR821b	Translation	4.5	8.083	1	24
Osa09LNT0579400.1	osa-miR821c	Cleavage	1.0	12.697	1	24
Osa09LNT0579400.1	osa-miR821c	Translation	4.5	8.083	1	24
Osa09LNT0579400.1	osa-miR2931	Cleavage	5.0	6.094	1	20
Osa09LNT0579400.1	osa-miR5157a-3p	Cleavage	4.5	11.674	1	24
Osa09LNT0579400.1	osa-miR5157b-3p	Cleavage	4.5	11.674	1	24
Osa09LNT0579400.1	osa-miR5162	Cleavage	5.0	8.083	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0579400.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0579400.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0579400.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0579400.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0579400.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0579400.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa09LNT0579400.1	osa-MIR821b	83.577	274	7	277	3.64e-67	252

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus