>Osa04LNT0490900.1

GACTTCAACTGAAAAAGTCATCAACAACAAAGTAGTATAATTCATCTAGATCTACAATTTTTATTTTGGTCATTTGTTCATCCGATAAAGTGATTTTAATATTGTTCACAAAATTTACATATCTCTCTTATAGTTTTATAAACCATATAAGAGATATGTAAATTTTGTGAATAATGTTTTTATCACTTTGTCGGATGAAGAAATGACCAAAATAAAAGTTATAGATATTGATTAGTTATACAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.210238

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0490900.1	osa-miR821a	Cleavage	1.0	12.873	1	24
Osa04LNT0490900.1	osa-miR821a	Translation	5.0	10.324	1	24
Osa04LNT0490900.1	osa-miR821b	Cleavage	1.0	12.873	1	24
Osa04LNT0490900.1	osa-miR821b	Translation	5.0	10.324	1	24
Osa04LNT0490900.1	osa-miR821c	Cleavage	1.0	12.873	1	24
Osa04LNT0490900.1	osa-miR821c	Translation	5.0	10.324	1	24
Osa04LNT0490900.1	osa-miR5162	Cleavage	5.0	10.324	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0490900.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0490900.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0490900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490900.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0490900.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0490900.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0490900.1	4	nan	Morphological trait	Root	RZ69	RG449

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa04LNT0490900.1	osa-MIR821c	85.019	267	1	266	9.26e-73	270
Osa04LNT0490900.1	osa-MIR821a	85.609	271	5	274	1.23e-76	283
Osa04LNT0490900.1	osa-MIR821b	83.764	271	7	277	7.83e-69	257

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus