>Osa09LNT0578600.1

AATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCATGATCTAAAACTTTTATTTTGGTCATTTCTTTATACGAGAAAGTGATAGTAGCATTATTTACAAAATTGACAAATCTCTTATCTGGTTTATAAATTATAACACATATATGTAAAAGTTGTGAATACTATTACTAACATTTTGTCAAATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.982595

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0578600.1	osa-miR821a	Cleavage	1.0	14.967	1	24
Osa09LNT0578600.1	osa-miR821a	Translation	4.5	10.071	1	24
Osa09LNT0578600.1	osa-miR821b	Cleavage	1.0	14.967	1	24
Osa09LNT0578600.1	osa-miR821b	Translation	4.5	10.071	1	24
Osa09LNT0578600.1	osa-miR821c	Cleavage	1.0	14.967	1	24
Osa09LNT0578600.1	osa-miR821c	Translation	4.5	10.071	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0578600.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0578600.1	9	Sub1	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa09LNT0578600.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0578600.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0578600.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0578600.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0578600.1	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0578600.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa09LNT0578600.1	osa-MIR821a	93.431	274	2	274	2.51e-113	405
Osa09LNT0578600.1	osa-MIR821b	92.336	274	7	280	2.66e-108	388
Osa09LNT0578600.1	osa-MIR821c	93.258	267	1	266	1.89e-109	392

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus