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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0572400.1

GATTTCAATTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCGATAAAGTGATAGTAACATTGTTCACAAATTTTACATATCTCTTATATGGTTTTACAAACTATGAGAAACAATGTTACTATCACTTTGTCGGATGAAGAAATGACCAAAATAAATGTTATAGATATTGATGTGTTATACAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.740048
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0572400.1 osa-miR821a Cleavage 1.0 13.906 1 24
Osa10LNT0572400.1 osa-miR821a Translation 4.5 9.784 1 24
Osa10LNT0572400.1 osa-miR821b Cleavage 1.0 13.906 1 24
Osa10LNT0572400.1 osa-miR821b Translation 4.5 9.784 1 24
Osa10LNT0572400.1 osa-miR821c Cleavage 1.0 13.906 1 24
Osa10LNT0572400.1 osa-miR821c Translation 4.5 9.784 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0572400.1 10 nan Physiological trait Sterility R2309 RG257
Osa10LNT0572400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0572400.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0572400.1 10 nan Resistance or Tolerance Other stress resistance R1933 R1629
Osa10LNT0572400.1 10 qPBN-10 Morphological trait Panicle/flower RM216 RM311
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa10LNT0572400.1 osa-MIR821a 83.636 275 1 274 7.49e-64 241
Osa10LNT0572400.1 osa-MIR821c 82.707 266 1 266 9.45e-58 220
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus