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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0478600.1

GATTTCAATTGAAAATGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTTGTTATTTCTTCATTCAACAAAATGTTAGTAACATTATTCCCAAATTTTACATATGTGTTATAATTTATAAACCAGATAAGAGATATGTCATGTTTGTGAACAATGTTACTATGCACTTTGTCGTATGTAGAAATGACCAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTCTCGATGACTTTTTCAGTTGATATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.25546
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0478600.1 osa-miR397a Translation 3.5 12.663 1 21
Osa02LNT0478600.1 osa-miR2878-5p Cleavage 5.0 23.483 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0478600.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0478600.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0478600.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0478600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa02LNT0478600.1 osa-MIR821a 92.029 276 1 274 1.18e-106 383
Osa02LNT0478600.1 osa-MIR821b 90.217 276 7 281 7.5e-99 357
Osa02LNT0478600.1 osa-MIR821c 91.418 268 1 266 1.48e-100 363
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus