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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0533300.1

GACTTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAATCCATCTGTATCTACAATTTTTATTTTGGTCATTTCTTCATCTGACAAAGTGATAGTAACATTGTTTACAAATTTTACATATCTCTTATACTGTTTTATAATCTATAAGAGATATATGTAAATTTTGTGAACAATGTTACTATTACTTTATCGGATGAAGAAATGACCAAAATAAAAGTTATAGATATTAATGAGTTATACAACTTTATTGTTGATGAATTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0593708
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0533300.1 osa-miR5157a-5p Cleavage 4.0 10.416 1 24
Osa11LNT0533300.1 osa-miR5157b-5p Cleavage 4.0 10.416 1 24
Osa11LNT0533300.1 osa-miR5162 Cleavage 5.0 9.848 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0533300.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0533300.1 11 Tid1 Morphological trait Dwarf nan nan
Osa11LNT0533300.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0533300.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0533300.1 11 fer11 Resistance or Tolerance Cold tolerance RM3701 RM552
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa11LNT0533300.1 osa-MIR821b 84.307 274 7 277 1.68e-70 263
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus