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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0548700.1

GATTTCAACTAAAAAAGTCATCAACAATAAAGTTGTATAACTCATCAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCGATAAAGTGATAGTAATATTATTCACAAATTTTACATATATCTACTATAGTCTATAAACTATATAATAGATATGTACATTTTGTGAACGATCTTATAAATCACTTTATCGGATGAAGAAATGACCCAAATAAAAGTTATAGATCTTGATGAGTTATACCACTTTGTTATTGATGACTTTTTCAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.12851
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0548700.1 osa-miR2931 Cleavage 4.0 7.533 1 20
Osa08LNT0548700.1 osa-miR5162 Cleavage 5.0 8.193 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0548700.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0548700.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0548700.1 8 nan Resistance or Tolerance Drought tolerance RM72 RM331
Osa08LNT0548700.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0548700.1 8 hd8 Physiological trait Flowering RZ562 RG978
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa08LNT0548700.1 osa-MIR821a 85.87 276 1 274 7.34e-79 291
Osa08LNT0548700.1 osa-MIR821b 84.477 277 7 281 1.01e-72 270
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus